Type: Package
Package: genieBPC
Title: Project GENIE BioPharma Collaborative Data Processing Pipeline
Version: 2.2.0
Authors@R: 
    c(
    person(given = "Jessica A.",
             family = "Lavery",
             role = c("aut", "cre"),
             email = "laveryj@mskcc.org",
             comment = c(ORCID = "0000-0002-2746-5647")),
      person(given = "Michael A.",
             family = "Curry",
             role = "aut",
             comment = c(ORCID = "0000-0002-0261-4044")),
      person(given = "Samantha",
             family = "Brown",
             role = "aut",
             comment = c(ORCID = "0000-0001-5352-974X")),
      person(given = "Karissa",
             family = "Whiting",
             role = "aut",
             comment = c(ORCID = "0000-0002-4683-1868")),
      person(given = "Yufei",
             family = "Deng",
             role = "aut",
             comment = c(ORCID = "0009-0000-3352-1126")),
      person(given = "Hannah",
             family = "Fuchs",
             role = "ctb",
             comment = c(ORCID = "0000-0003-2426-0096")),
      person(given = "Axel",
             family = "Martin",
             role = "ctb"),
      person(given = "Daniel D.",
             family = "Sjoberg",
             role = c("ctb"),
             email = "danield.sjoberg@gmail.com",
             comment = c(ORCID = "0000-0003-0862-2018")))
Description: The American Association Research (AACR) Project Genomics
        Evidence Neoplasia Information Exchange (GENIE) BioPharma
        Collaborative represents a multi-year, multi-institution effort
        to build a pan-cancer repository of linked clinico-genomic
        data. The genomic and clinical data are provided in multiple
        releases (separate releases for each cancer cohort with updates
        following data corrections), which are stored on the data
        sharing platform 'Synapse' <https://www.synapse.org/>. The
        'genieBPC' package provides a seamless way to obtain the data
        corresponding to each release from 'Synapse' and to prepare
        datasets for analysis.
License: MIT + file LICENSE
BugReports: https://github.com/GENIE-BPC/genieBPC/issues
Depends: R (>= 3.5)
Imports: cli (>= 2.5.0), dplyr (>= 1.0.7), dtplyr (>= 1.1.0), httr,
        jsonlite, purrr (>= 1.0.2), rlang (>= 1.0.0), stringr (>=
        1.4.0), sunburstR, tibble (>= 3.1.2), tidyr
Suggests: covr (>= 3.5.1), ggplot2 (>= 3.3.5), gt (>= 0.3.0), gtsummary
        (>= 1.5.2), knitr (>= 1.33), magrittr (>= 2.0.1), plotly (>=
        4.10.0), rmarkdown (>= 2.8), testthat (>= 3.0.0), markdown,
        spelling
VignetteBuilder: rmarkdown, knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: TRUE
RoxygenNote: 7.3.3
URL: https://genie-bpc.github.io/genieBPC/
Language: en-US
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
Repository: https://genie-bpc.r-universe.dev
Date/Publication: 2026-07-02 17:49:55 UTC
RemoteUrl: https://github.com/genie-bpc/geniebpc
RemoteRef: HEAD
RemoteSha: 71f2e1fc3d43fe784a38e0b8a133eaa1a56db55a
NeedsCompilation: no
Packaged: 2026-07-02 19:56:04 UTC; root
Author: Jessica A. Lavery [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2746-5647>),
  Michael A. Curry [aut] (ORCID: <https://orcid.org/0000-0002-0261-4044>),
  Samantha Brown [aut] (ORCID: <https://orcid.org/0000-0001-5352-974X>),
  Karissa Whiting [aut] (ORCID: <https://orcid.org/0000-0002-4683-1868>),
  Yufei Deng [aut] (ORCID: <https://orcid.org/0009-0000-3352-1126>),
  Hannah Fuchs [ctb] (ORCID: <https://orcid.org/0000-0003-2426-0096>),
  Axel Martin [ctb],
  Daniel D. Sjoberg [ctb] (ORCID:
    <https://orcid.org/0000-0003-0862-2018>)
Maintainer: Jessica A. Lavery <laveryj@mskcc.org>